MacadamiaGGD
A comprehensive platform for germplasm innovation and
functional genomics in
Macadamia
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Phylogenetic Analysis
Genomes
Macadamia integrifolia HAES 741
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Macadamia integrifolia HAES 344
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Macadamia jansenii
Macadamia tetraphylla
Macadamia ternifolia
Macadamia integrifolia chloroplast
Macadamia tetraphylla chloroplast
Macadamia ternifolia chloroplast
Macadamia integrifolia mitochondrion
Macadamia tetraphylla mitochondrion
Macadamia ternifolia mitochondrion
Expression
Macadamia integrifolia HAES 741
Macadamia integrifolia HAES 344
Macadamia integrifolia H2
BLAST
Markers
SSR Markers
SNP Markers
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Tools
Primer designer (Primer 3)
Sequence Fetch
Enrichment analysis
Multiple sequence alignment (Muscle)
Genome alignment (LASTZ)
Gene homology annotation (GeneWise)
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User manual
Primer designer (Primer 3)
Type of query:
Species:
Chromosome:
Start position:
End position:
Enter FASTA sequences:
e.g.,
example
Parameter Selection:
Sequence target:
Product Size Ranges:
Optimal primer size:
Max primer size:
Min primer size:
Optimal primer TM:
Max primer TM:
Min primer TM:
Optimal GC percent:
Max GC percent:
Min GC percent:
Max #N's accepted :
Max Poly-X:
Max Internal Poly-X:
Max Self Complementarity:
Max 3' Self Complementarity :
Max Pair Complementarity:
Max 3' Pair Complementarity:
Run
Result:
Fasta result:
Download
Tree result:
Download
Tree plot:
Download
Linear
Radial